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Selected Publications

by Cynthia Baker — last modified 2006-12-01 02:45 PM

 

SELECTED PUBLICATIONS (from a total of 258)

 

  1. Hanash, SM, Strahler, JR, Neel, JV, Hailat, N, Melhem, R, Keim, D, Zhu, XX, Wagner, D, Gage, DA and Watson, JT: Highly resolving two-dimensional gels for protein microsequencing.  Proc. Natl. Acad. Sci., USA 88: 5709-5713, 1991.
  2. Hanash, S, Strahler, J, Chan, Y, Kuick, R, Teichroew, D, Neel, JV, Hailat, N, Keim, D, Gratiot-Deans, J, Ungar, D, Melhem, R, Zhu, XX, Andrews, P, Lottspeich, F, Eckerskorn, C, Chu, E, Ali, I, Fox, D, Richardson, BC and Turka, L: Database analysis of protein expression patterns during T cell ontogeny and activation.  Proc. Natl. Acad. Sci., USA 90: 3314-3318, 1993.
  3. Wang, YK, Liao, PC, Allison, J, Gage, DA, Andrews, PC, Lubman, DM, Hanash, SM and Strahler, JR: Phorbol 12-myristate 13-acetate-induced phosphorylation of Op18 in Jurkat T cells:  Identification of phosphorylation sites by matrix-assisted laser desorption ionization mass spectrometry.  J. Biol. Chem. 268: 14269-14277, 1993.
  4. Strahler, JR, Zhu, XX, Hora, N, Wang, YK, Andrews, PC, Roseman, NA, Neel, JV, Turka, L and Hanash, SM: Maturation stage and proliferation dependent expression of dUTPase in human T cells.  Proc. Natl. Acad. Sci., USA 90: 4991-4995, 1993.
  5. Hanash, SM, Beretta, L, Barcroft, CL, Sheldon, S, Glover, TW, Ungar, D, Sonenberg, N: Mapping of the gene for interferon-inducible dsRNA-dependent protein kinase to chromosome 2p21-22, a site of rearrangements in myeloproliferative disorders.  Genes Chromosom. Cancer, 8: 34-37, 1993.
  6. Ungar, D, Hailat, N, Strahler, JR, Kuick, RD, Brodeur, GM, Seeger, RC, Reynolds, CP and Hanash, SM: Hsp27 expression in neuroblastoma:  Correlation with disease stage.  J. Natl. Cancer Inst. 86: 780-784, 1994.
  7. Chang, CL, Zhu, XX, Thoraval, DH, Ungar, D, Hora, N, Van Antwerp, M, Radany, E, Strahler, JR and Hanash, SM: nm23-H1 mutation in neuroblastoma.  Nature 370: 335-336, 1994.
  8. Jin, X, Chen, Y, Lubman, DM, Misek, D and Hanash, SM: Capillary electrophoresis/tandem mass spectrometry for analysis of proteins from two-dimensional sodium dodecyl sulfate polyacrylamide gel electrophoresis.  Rapid Commun. Mass. Spectrom. 13(23):2327-2334, 1999.
  9. Wall, DB, Kachman, MT, Gong, S, Hinderer, R, Parus, S, Misek, DE, Hanash, SM, and Lubman, DM: Isoelectric focusing nonporous RP HPLC: a two-dimensional liquid-phase separation method for mapping of cellular proteins with identification using MALDI-TOF mass spectrometry.  Anal. Chem. 72(6):1099-1111, 2000.
  10. Grolleau, A, Kaplan, MJ, Hanash, SM, Beretta, L, and Richardson, B: Impaired translational response and increased protein kinase PKR expression in T cells from lupus patients.  J. Clin. Invest. Dec;106(12):1561-1568, 2000.
  11. Le Naour F, Hohenkirk L, Grolleau A, Misek DE, Lescure P, Geiger JD, Hanash SM, and Beretta L: Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics.  J. Biol. Chem. Mar 8;276(21):17920-17931, 2001.
  12. Madoz-Gurpide, J, Wang, H,  Misek, DE, Brichory, F, Hanash, SM: Protein based microarrays: A tool for probing the proteome of cancer cells and tissues.  Proteomics. Oct;1(10): 1279-1287, 2001.
  13. Brichory, F., Misek, D., Yim, A., Krause, M., Giordano, T., Beer,D., Hanash, S. An immune response manifested by common occurrence of Annexins I and II autoantibodies and high circulating levels of Interleukin 6 in lung cancer.  Proc. Natl. Acad. Sci., USA. Aug 14;98(17):9824-9829, 2001.
  14. Brichory, F., Beer, D. Le Naour, F., Giordano, T. and Hanash, S. Proteomics-based identification of protein gene product 9.5 as a tumor antigent that induces a humoral immune response in lung cancer.  Cancer Res. Nov;61:7908-7912, 2001.
  15. Le Naour, F., Misek, D.E., Krause, M.C., Deneux, L, Giordano, T.J., and Hanash, S.M. Proteomics-based identification of RS/DJ-1 as a novel circulating tumor antigen in breast cancer. Clin Cancer Res. Nov;7(11): 3328-3335, 2001.
  16. Li, JY, Lescure, PA, Misek, DE, Lai, YM, Chai, BX, Kuick, R, Thompson, RC, Demo, RM, Kurnit, DM, Michailidis, G. Hanash, SM and Gantz, I: Food deprivation-induced expression of Minoxidil Sulfotransfease in the hypothalamus uncovered by microarray analysis.  J Bio Chem. Mar 15;277(11):9069-9076, 2002.
  17. Grolleau, A, Bowman, J, Pradet-Balade, B, Puravs, E, Hanash, S, Garcia-Sanz, JA and Beretta, L: Global and specific translational control by rapamycin in T cells uncovered by microarray and proteomics.  J Biol Chem. June;277(25):22175-22184, 2002.
  18. Beer, DG, Kardia, SLR, Huang, C-C, Giordano, TJ, Levin, AM, Misek, DE, Lin, L, Chen, G, Gharib, TG, Thomas, DG, Lizyness, ML, Kuick, R, Hayasaka, S, Taylor, JMG, Iannettoni, MD, Orringer, MB and Hanash, S: Gene expression profiles predict survival of pateints with lung adenocarcinoma.  Nat Med. July;8(8):816-824, 2002.
  19. Shin, B, Wang, H, Yim, A, Le Naour, F, Brichory, F, Jang, J, Zhao, R, Puravs, E, Tra, J, Michael, C, Misek, D and Hanash, S: Global profiling of the cell surface proteome of cancer cells uncovers an abundance of proteins with chaperone function.  J Biol Chem. Feb 28;278(9):7607-7616, 2002.
  20. Hanash, S: Disease proteomes.  Nature. March 13;422(6928):226-232, 2003.
  21. Wang, H and Hanash, S: Multi-dimensional liquid based separations in proteomics.  J Chromatogr B. April 5;787(1):11-18, 2003.
  22. Shin, BK, Hong, W and Hanash, S: Proteomics approaches to uncover the repertoire of circulating biomarkers for breast cancer.  J Mammary Gland Biol Neoplasia, Oct;7(4):407-413, 2003.
  23. Jang, JH and Hanash S: Profiling the cell surface proteome.  Proteomics. Oct;3(10):1947-1954, 2003.
  24. Nam, MJ, Madoz-Gurpide, J, Wang, H, Lescure, P, Schmalbach, CE, Zhao, R, Misek, DE, Kuick, R, Brenner, DE and Hanash, SM: Molecular profiling of the immune response in colon cancer using protein microarrays: Occurrence of autoantibodies to ubiquitin C-terminal hydrolase L3.  Proteomics. Nov;3(11):2108-2115, 2003.
  25. Bouwman, K, Qiu, J, Zhou, H, Schotanus, M, Mangold, L, Vogt, R, Erlandson, E, Trenkle, J, Partin, AW, Misek, DE, Omenn, GS, Haab, BB and Hanash, S: Microarrays of tumor cell derived proteins uncover a distinct pattern of prostate cancer serum immunoreactivity.  Proteomics. Nov;3(11):2200-2207, 2003.
  26. Qiu, J, Madoz-Gurpide, SM: Development of natural protein microarrays for diagnosing cancer based on an antibody response to tumor antigens.  J Proteome Res. Mar-Apr;3(2):261-267, 2004.
  27. Hanash, S and Wang, H:  Intact-protein based sample preparation strategies for proteome analysis in combination with mass spectrometry. Mass Spectrom Rev. May-June; 24(3):413-26, 2005.
  28. Wang, H, Clouthier SG, Galchev V, Misek DE, Duffner U, Min CK, Zhao R, Tra J, Omenn GS, Ferrara JL, Hanash SM.  Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids.  Mol Cell Proteomics. May;4(5):618-25, 2005.
  29. Misek, D. E., R. Kuick, et al. "A wide range of protein isoforms in serum and plasma uncovered by a quantitative Intact Protein Analysis System (IPAS)." Proteomics, Aug 5(13): 3343-52, 2005.
  30. Omenn, G. S., D. J. States,…Hanash, S. "Overview of the HUPO Plasma Proteome Project:  Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database." Proteomics Aug 16;5(13): 3226-3245, 2005.
  31. Gao WM, Kuick R, Orchekowski RP, Misek SE, Qiu J, Greenberg AK, Rom WN, Brenner DE, Omenn GS, Haab BB, Hanash SM. Distinctive serum protein profiles involving abundant proteins in lung cancer patients based upon antibody microarray analysis.  BMC Cancer. Aug 23;5:110, 2005.
  32. Rauch A, Bellew M, Eng J, Fitzgibbon M, Holzman T, Hussey P, Igra M, Maclean B, Lin CW, Detter A, Fang R, Faca V, Gafken P, Zhang H, Whitaker J, States D, Hanash S, Paulovich A, McIntosh MW., Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.  J Proteome Res. Jan;5(1):112-21, 2006.
  33. States DJ, Omenn GS, Blackwell TW, Fermin D, Eng J, Speicher DW, Hanash SM.  Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study.  Nat Biotechnol. Mar;24(3):333-8, 2006.
  34. Murdoch S, Djuric U, Mazhar B, Seoud M, Khan R, Kuick R, Bagga R, Kircheisen R, Ao A, Ratti B, Hanash S, Rouleau GA, Slim R.  Mutations in NALP7 cause recurrent hydatidiform moles and reproductive wastage in humans.  Nat Genet. Mar;38(3):300-2, 2006.
  35. Faca V*, Coram M, Phanstiel D, Glukhova V, Zhang Q, Fitzgibbon M, McIntosh M, Hanash S,. Quantitative Analysis of Acrylamide Labeled Serum Proteins by LC-MS/MS J Proteome Res 2006 Aug; 5(8): 2009-18. 

 
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